TWOFIT¶

TWOFIT is a utility program for the extraction of spectroscopic constants (\(r_e\), \(\omega_e\), \(x_e\omega_e\) ) of diatomic molecules. It can also extract equivalent information from normal modes provided the reduced mass \(\mu\) is given.

Theory¶

Consider the following Hamiltonian

\[\hat{H}=\hat{H}_{o}+\hat{H}_{1}+\hat{H}_{2}\]

where \(\hat{H}_{0}\) is the Hamiltonian for the harmonic oscillator

\[\hat{H}_{0}=\frac{\hat{p}^{2}}{2\mu}+\frac{1}{2}V_{2}x^{2};\quad E_{v}^{(0)}=\hbar\omega(v+\frac{1}{2})\]

and \(\hat{H}_{1}\) and \(\hat{H}_{2}\) consists of cubic and quartic contributions, respecetively, to a quartic force field

\[\hat{H}_{1}=\frac{1}{6}V_{3}x^{3};\quad\hat{H}_{2}=\frac{1}{24}V_{4}x^{4}\]

From second order perturbation theory we get the following energy

\[E_{v}=\hbar\omega(v+\frac{1}{2})+\frac{1}{24}V_{4}\left\langle v\left|x^{4}\right|v\right\rangle -\frac{V_{3}^{2}}{36}\left[\frac{\left|\left\langle v\left|x^{3}\right|v+1\right\rangle \right|^{2}-\left|\left\langle v\left|x^{3}\right|v-1\right\rangle \right|^{2}}{\hbar\omega}+\frac{\left|\left\langle v\left|x^{3}\right|v+3\right\rangle \right|^{2}-\left|\left\langle v\left|x^{3}\right|v-3\right\rangle \right|^{2}}{3\hbar\omega}\right]\]

Further manipulations then give the final expression

\[\begin{split}\begin{array}{lcl} E_{v} & = & \hbar\omega(v+\frac{1}{2})+\frac{1}{16}V_{4}\left(\frac{\hbar}{\mu\omega}\right)^{2}(v^{2}+v+\frac{1}{2})-\frac{5V_{3}^{2}}{48\hbar\omega}\left(\frac{\hbar}{\mu\omega}\right)^{3}(v^{2}+v+\frac{11}{30})\\ & = & \hbar\omega(v+\frac{1}{2})-\left[\frac{5V_{3}^{2}}{48\hbar\omega}\left(\frac{\hbar}{\mu\omega}\right)^{3}-\frac{V_{4}}{16}\left(\frac{\hbar}{\mu\omega}\right)^{2}\right](v+\frac{1}{2})^{2}+\frac{1}{64}V_{4}\left(\frac{\hbar}{\mu\omega}\right)^{2}-\frac{7V_{3}^{2}}{576\hbar\omega}\left(\frac{\hbar}{\mu\omega}\right)^{3}\end{array}\end{split}\]

to be compared with the general expression

\[E_{v}=(v+\frac{1}{2})\hbar\omega-(v+\frac{1}{2})^{2}\hbar\omega x_{e}\]

The anharmonic constant can accordingly be calculated as

\[\hbar\omega x_{e} = \left[\frac{5V_{3}^{2}}{48\hbar\omega}\left(\frac{\hbar}{\mu\omega}\right)^{3}-\frac{V_{4}}{16}\left(\frac{\hbar}{\mu\omega}\right)^{2}\right]\]

The average displacement is given as the standard deviation

\[\Delta x=\sigma =\sqrt{\left\langle x^{2}\right\rangle -\left\langle x\right\rangle ^{2}}=\sqrt{\left\langle x^{2}\right\rangle}=\sqrt{\frac{\hbar\left(\nu+\frac{1}{2}\right)}{m\omega}}\]

Usage¶

The usage of TWOFIT is rather self-explanatory. TWOFIT will read a formatted file of distances and energies prepared by the user. It will then, through a dialogue with the user, perform a polynomial fit to specified degree of the potential curve, find the equilibrium distance \(r_e\) by a Newton-Raphson search and from the extracted force constants \(V_2\), \(V_3\) and \(V_4\) calculate the harmonic frequency \(\omega_e\) as well as the anharmonic constant \(\omega_e x_{e}\). For a diatomic molecule, the program can look up masses of the most abundant isotope for specified nuclear charge or accept atomic masses from the user in order to calculate the reduced mass \(\mu\). For normal modes, the reduced mass must be given directly.

Example1: Spectroscopic constants of HgF¶

The potential curve of mercury monofluoride HgF has been calculated at the X2C/B3LYP level. We extract the following data into the file B3LYPpot

94    -19746.664565273648
96    -19746.665970540136
98    -19746.667076184542
00    -19746.667907574058
02    -19746.668483409372
04    -19746.668818993279
06    -19746.668929911564

We fire up TWOFIT:

twofit.x


         ***************************************************************
         ********** TWOFIT for diatomics : Written by T. Saue **********
         ***************************************************************

 Select one of the following:
   1. Spectroscopic constants.
   2. Spectroscopic constants + properties.

We chose the first option:

1
Name of input file with potential curve with " R E(R)" values (A40)

We provide the name of the file containing the potential curve:

B3LYPpot
Select one of the following:
  1. Bond lengths in Angstroms.
  2. Bond lengths in atomic units.
 (Note that all other quantities only in atomic units !)

The bond lengths are in this case in Angstroms:

1
* Number of points read:    7

** SPECTROSCOPIC CONSTANTS:

Polynomial fit: Give order of polynomial

With seven points the maximal order of the polynomial is six. We select order five, but the user is encouraged to try different options to see how the calculated spectroscopic constants converge with the number of points, their spacing as well as order of the polynomial:

5
   * Polynomial fit of order:  5
   * Coefficients:
   c(  0):   -1.943938E+04
   c(  1):   -4.003912E+02
   c(  2):    2.091186E+02
   c(  3):   -5.469999E+01
   c(  4):    7.162816E+00
   c(  5):   -3.754896E-01
        X     Predicted Y Relative error
    1.940     -1.974666456527E+04 -2.5608E-14
    1.960     -1.974666597054E+04  1.3265E-13
    1.980     -1.974666707618E+04 -3.4212E-13
    2.000     -1.974666790758E+04  4.4879E-13
    2.020     -1.974666848340E+04 -3.4194E-13
    2.040     -1.974666881900E+04  1.3228E-13
    2.060     -1.974666892991E+04 -2.6345E-14
   * Chi square :  .1840E-15
   * Chi square per point:  .2628E-16
   * Number of singularities(SVD):   0
* Local minimum   :           2.06044 Angstroms =            3.89366 Bohrs
* Expected energy : -1.9746668930E+04 Hartrees
Select one of the following:
  1. Select masses of the most abundant isotopes.
  2. Employ user-defined atomic masses.
  3. Normal modes: Give reduced mass.

We go for the easy solution:

1
* Give charge of atom A:

The order of atoms does not matter. We select mercury first:

80
* Mass     :    201.9706
* Abundance:     29.8600
* Give charge of atom B :

and then fluorine:

9
* Mass     :     18.9984
* Abundance:    100.0000
* Force constant  :        2.2407E+02 N/m
* Frequency       : 1.40297E+13 Hz
                    4.67981E+02 cm-1
* Mean displacement in harmonic ground state:    0.0644 Angstroms
  corresponding to interval: [    1.9960,    2.1248]
* WARNING :     3 points lie outside interval...
This may reduce the quality of your spectroscopic constants.
* Omega*x_e       : 1.64740E+01 cm-1
 Do you want to calculate spectroscopic constants with other isotope(s) (y/n)?

Note that we get a warning, because the program checks whether all points lie inside the standard deviation of the ground state (harmonic approximation), corresponding to the mean displacement \(\pm\Delta x\) (see above). Such a warning does not disqualify the fit, but the user has to judge whether he has selected his opints wisely. Various options follow, but we will simply say no to all of them:

n
 Do you want to calculate spectroscopic constants
  with another polynomial order (y/n)?
n
 Do you want to calculate spectroscopic constants at another geometry (y/n)?
n

Example 2: Anharmonicity of C-F stretch in CHFClBr¶

We start from a set of CCSD(T) energies (using scalar relativistic pseudopotentials) along the normal coordinate \(Q\) associated with the C-F stretch of the chiral CHFClBr:

-0.50  -610.12399429
-0.40  -610.62520179
-0.30  -610.86649287
-0.20  -610.97769875
-0.10  -611.02238183
 0.00  -611.03293760
 0.10  -611.02641387
 0.20  -611.01190951
 0.50  -610.95789506
 0.75  -610.91897869
 1.00  -610.89433750

The normal coordinates and associated normal coordinate \(\mu = 9.7032\) was obtained from vibrational analysis (not using DIRAC). The TWOFIT run proceeds as before:

twofit.x


         ***************************************************************
         ********** TWOFIT for diatomics : Written by T. Saue **********
         ***************************************************************

Select one of the following:
  1. Spectroscopic constants.
  2. Spectroscopic constants + properties.
1
Name of input file with potential curve with " R E(R)" values (A40)
chfclbr.pes.dat
Select one of the following:
  1. Bond lengths in Angstroms.
  2. Bond lengths in atomic units.
 (Note that all other quantities only in atomic units !)
1
* Number of points read:   11

** SPECTROSCOPIC CONSTANTS:

Polynomial fit: Give order of polynomial
9
   * Polynomial fit of order:  9
   * Coefficients:
   c(  0):   -6.110329E+02
   c(  1):    6.084737E-05
   c(  2):    2.297324E-01
   c(  3):   -2.947082E-01
   c(  4):    2.477551E-01
   c(  5):   -1.473893E-01
   c(  6):    8.141347E-02
   c(  7):   -7.485671E-02
   c(  8):    4.956602E-02
   c(  9):   -1.180208E-02
        X     Predicted Y Relative error
   -0.500     -6.101239943742E+02  1.3793E-10
   -0.400     -6.106252010277E+02 -1.2483E-09
   -0.300     -6.108664959044E+02  4.9673E-09
   -0.200     -6.109776918295E+02 -1.1327E-08
   -0.100     -6.110223916741E+02  1.6111E-08
    0.000     -6.110329287639E+02 -1.4461E-08
    0.100     -6.110264185901E+02  7.7249E-09
    0.200     -6.110119083146E+02 -1.9564E-09
    0.500     -6.109578950951E+02  5.7392E-11
    0.750     -6.109189786861E+02 -6.3733E-12
    1.000     -6.108943375002E+02  4.0123E-13
   * Chi square :  .2564E-09
   * Chi square per point:  .2331E-10
   * Number of singularities(SVD):   0
* Local minimum   :          -0.00007 Angstroms =           -0.00013 Bohrs
* Expected energy : -6.1103292877E+02 Hartrees
Select one of the following:
  1. Select masses of the most abundant isotopes.
  2. Employ user-defined atomic masses.
  3. Normal modes: Give reduced mass.

but now we select the third option:

   3
* Give reduced mass in Daltons:
9.7032
* Force constant  :        7.1570E+02 N/m
* Frequency       : 3.35432E+13 Hz
                    1.11888E+03 cm-1
* Mean displacement in harmonic ground state:    0.0557 Angstroms
  corresponding to interval: [   -0.0558,    0.0557]
* WARNING :    10 points lie outside interval...
This may reduce the quality of your spectroscopic constants.
* Omega*x_e       : 9.10592E+00 cm-1