Parallel run informationΒΆ
My shell environment variables are not forwarded to the compute nodes. What do i have to do?
Assuming you are using our submit script pam to submit your parallel calculation you can forward any environment variable, e.g., LD_LIBRARY_PATH, to the slave-node shell by adding to you pam command line:
- ./pam –mpiarg=”-x LD_LIBRARY_PATH” (for OpenMPI)
- ./pam –mpiarg=”-envall” (for IntelMPI and MPICH(2))
In the latter case ALL environment variables will be forwarded in one shot whereas for OpenMPI you may need to provide the most essential environment variables individually. These may be for a typical parallel Dirac run:
- LD_LIBRARY_PATH
- BASDIR
- PATH
